| Use the EMBOSS/wEMBOSS tools and environment to answer the following question.
Please note all intermediary steps you used to reach the final results (with details for all non-default parameters). |
| Exam |
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| You receive 3 protein sequences and the 3 mRNA associated sequences.
You would like to derive primers found in regions common to all 3 mRNA sequences aligned using the protein sequences as guides. a) do a multiple sequence alignment (MSA) of the 3 proteins (emma) b) align the DNA sequences over the protein MSA (tranalign). c) derive a consensus for perfectly conserved regions (cons). d) extract 5 potential primer pairs (eprimer3) Give the 5 pairs and the positions of the amplified fragment (print eprimer3 results). What is the size of the largest amplified fragment? |