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Schedule 2014

Location: reading room of the Genopode Building (Quartier Sorge, 1015 Dorigny)

Date Topic Speakers
12 Nov 2014
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
10 Sep 2014
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
21 May 2014
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
04 Apr 2014
Reproducible Research Frédéric Schütz, Sarah Gerster
01 Apr 2014
Introduction to Computer-Aided Drug Design at SIB Vincent Zoete, Antoine Daina, Aurélien Grosdidier, David Gfeller, Justyna Iwaszkiewicz
19 Feb 2014
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis

 

Workshops held in 2013 and earlier

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Date Topic Speakers
25 Nov 2013
Qualitative modelling in the era of big data I. Xenarios, D. Thieffry, A. Naldi
13 Nov 2013
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
07 Nov 2013
Introduction to protein structure visualization and comparison using Swiss-PdbViewer N. Guex
30 Oct 2013
SPARQLing biological data in RDF: a practical introduction for bioinformaticians J. Bolleman, D. Kuznetsov
12 Sep 2013
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
22 May 2013
High Performance Computing (HPC) in Life Science Heinz Stockinger, Vassilios Ioannidis
30 Apr 2013
Introduction to transcriptomics
29 Apr 2013
Multivariate analysis for exploration and visualisation of biological data Charlotte Soneson
27 Feb 2013
High Performance Computing (HPC) in Life Science Heinz Stockinger
13 Dec 2012
High Performance Computing (HPC) in Life Science Heinz Stockinger
12 Dec 2012
SPARQLing biological data in RDF: a practical introduction for bioinformaticians Jerven Bolleman, Dmitry Kuznetsov
05 Nov 2012
SPARQLing biological data in RDF: a practical introduction for bioinformaticians Jerven Bolleman, Dmitry Kuznetsov
17 Oct 2012
Integration of data from different omics Charlotte Soneson
12 Oct 2012
Integration of data from different omics Charlotte Soneson
02 Oct 2012
High Performance Computing (HPC) in Life Science Heinz Stockinger
28 Sep 2012
Advanced Technical Presentation Techniques Damian Conway
20 Jul 2012
High Performance Computing (HPC) in Life Science Heinz Stockinger
31 May - 01 Jun 2012
ChIP-seq Data Analysis Philipp Bucher, Jacques Rougemont
25 May 2012
Multivariate analysis for exploration and visualisation of biological data Charlotte Soneson
14 May 2012
Graphical presentation of statistics data for biologists Frédéric Schütz
11 May 2012
High Performance Computing (HPC) in Life Science Heinz Stockinger
27 Apr 2012
Advanced Mass-Spectrometry based Proteomics:
quantification and post-translational modifications
Patrice Waridel, Manfredo Quadroni
12 Mar - 13 Mar 2012
Cytoscape :
Introduction to the Analysis and Visualization of Biological Networks
J. "Scooter" Morris, A. Kuchinsky, A. Pico
25 Nov 2011
High Performance Computing (HPC) in Life Science Heinz Stockinger
11 Nov 2011
High Performance Computing (HPC) in Life Science Heinz Stockinger
06 Oct - 07 Oct 2011
PSIMEx Workshop: Interactions and Pathways Sandra Orchard
11 Jul - 12 Jul 2011
Cytoscape: Introduction to the Analysis and Visualization of Biological Networks Vassilios Ioannidis
20 May 2011
De Novo Genome Assembly Laurent Falquet
06 May 2011
De Novo Genome Assembly Laurent Falquet
19 Apr 2011
High Performance Computing (HPC) in Life Sciences H. Stockinger
15 Apr 2011
Introduction to Mass-Spectrometry based Proteomics Patrice Waridel, Manfredo Quadroni
01 Apr 2011
UniProt protein sequence databases: use and pitfalls Marie-Claude Blatter
25 Mar 2011
High Performance Computing (HPC) in Life Sciences H. Stockinger
10 Dec 2010
UNIX Basics - 2010 V. Flegel, A. Fortier
03 Dec 2010
An introduction to Subversion (SVN) - 2010 A. Fortier
26 Nov 2010
UNIX Basics - 2010 V. Flegel, A. Fortier
05 Nov 2010
High Performance Computing (HPC) in Life Sciences H. Stockinger
25 Jun 2010
High Performance Computing (HPC) in Life Sciences H. Stockinger
07 May 2010
Protein Identification by Mass Spectrometry M. Quadroni, P. Waridel
30 Apr 2010
Protein Identification by Mass Spectrometry M. Quadroni, P. Waridel
19 Apr - 23 Apr 2010
Perl and presentation techniques courses Damian Conway
19 Mar 2010
High Performance Computing (HPC) in Life Sciences H. Stockinger
10 Mar 2010
Vital-IT Genome Assembly Workshop L. Falquet
15 Feb - 16 Feb 2010
Perl Programming for Life Sciences V. Ioannidis, A. Valsesia
03 Dec - 04 Dec 2009
Perl Programming for Life Sciences V. Ioannidis, A. Valsesia
26 Nov - 27 Nov 2009
Ensembl: beyond the website Benoît Ballester
16 Oct 2009
Protein-Protein Interactions:
Protein functions identified through their interacting partners (2nd date)
I. Xenarios
11 Sep 2009
Protein-Protein Interactions:
Protein functions identified through their interacting partners.
I. Xenarios
03 Jul 2009
Statistics for Biologists: real world examples (2nd date) F. Schütz
26 Jun 2009
Statistics for Biologists: real world examples F. Schütz
07 Nov 2008
In silico Laboratory Workflows (Bioinformatics Web Services) L. Falquet, H. Stockinger
27 Jun 2008
Mine your protein sequences M. Pagni, L. Falquet
23 May 2008
Protein-Protein Interactions:
Protein functions identified through their interacting partners.
I. Xenarios
07 Dec 2007
Introduction to Homology Modeling O. Michielin, V. Zoete
05 Oct 2007
Phylogeny using Maximum Likelihood M. Robinson
22 Jun 2007
Protein Identification by Mass Spectrometry M. Quadroni, P. Waridel, M. Colzani
11 May 2007
Introduction to wEMBOSS L. Falquet
01 Dec 2006
Introduction to statistics for biologists M. Delorenzi, F. Schütz
03 Nov 2006
Finding and analysing eucaryotic promoters P. Bucher, C. Schmid, A. Reymond
25 Aug 2006
Optimizing the design of a microarray experiment M. Delorenzi, E. Migliavacca
23 Jun 2006
Analysis of domains and motifs in protein sequences M. Pagni, L. Cerutti, L. Falquet
24 Mar 2006
Sequence-based database searches: BLAST and beyond C. V. Jongeneel, C. Iseli

 

Presentation

The SIB workshops are organized to establish an ongoing dialog between experimentalists and bioinformaticians. The staff of the SIB and the CIG will present themes which reflect real-life problems faced by experimentalists. The workshops are spread over the year in 1-day sessions.

 

Number of participants: minimum 4, maximum 24 (ideally 10-12).

Important: participants who wish to receive formal credits will have to attend at least four workshops.

 

Requests & informations

For any request or query you might have, do not hesitate to .

 

Latest update 2014-05-02
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